Work overview

Section 27 of 37

CHALLENGES AND LIMITATIONS OF PROBIOTIC USE

Mechanistic insights into probiotic modulation of the gut–immune axis and their role as sustainable antibiotic alternatives in poultry production: An integrative review

Andreas Berny Yulianto, Aswin Rafif Khairullah, Widya Paramita Lokapirnasari, Mohammad Anam Al-Arif, Zulfi Nur Amrina Rosyada, Emy Koestanti Sabdoningrum, Bodhi Agustono, Mirni Lamid, Kartika Purnamasari, Bima Putra Pratama, Riza Zainuddin Ahmad, Wasito Wasito, Saifur Rehman, and Muhammad Aviv Firdaus · 2026

Contents

Section 27 of 37

  1. 01INTRODUCTION
  2. 02REVIEW METHODOLOGY
  3. 03BASIC CONCEPTS OF PROBIOTICS IN POULTRY
  4. 04DEFINITION OF PROBIOTICS
  5. 05TYPES AND SOURCES OF PROBIOTICS FOR POULTRY
  6. 06STRAIN-SPECIFIC EFFECTS AND QUANTITATIVE EVIDENCE
  7. 07GENERAL MECHANISMS OF PROBIOTICS IN THE DIGESTIVE TRACT
  8. 08IMMUNE SYSTEM IN POULTRY
  9. 09MUCOSAL IMMUNITY (GALT)
  10. 10INNATE IMMUNITY
  11. 11ADAPTIVE IMMUNITY
  12. 12GUT–IMMUNE AXIS RELATIONSHIP IN POULTRY
  13. 13THE EFFECT OF PROBIOTICS ON POULTRY IMMUNITY
  14. 14PROBIOTICS IN INCREASING INNATE IMMUNITY
  15. 15PROBIOTICS AND ADAPTIVE IMMUNITY
  16. 16EFFECTS ON MAJOR IMMUNE ORGANS
  17. 17PROBIOTICS IN REDUCING STRESS AND INFLAMMATION
  18. 18PROBIOTIC–MICROBIOTA INTERACTIONS IN SUPPORTING IMMUNITY
  19. 19THE EFFECT OF PROBIOTICS ON DISEASE RESISTANCE IN POULTRY
  20. 20FACTORS THAT INFLUENCE THE SUCCESS OF PROBIOTICS
  21. 21DOSAGE AND DURATION OF ADMINISTRATION
  22. 22DOSAGE FORM
  23. 23STABILITY AND RESISTANCE TO PH AND TEMPERATURE
  24. 24COMBINATION WITH PREBIOTICS (SYNBIOTICS)
  25. 25BACTERIAL STRAINS USED
  26. 26IN OVO AND EARLY-LIFE PROBIOTIC ADMINISTRATION
  27. 27CHALLENGES AND LIMITATIONS OF PROBIOTIC USE
  28. 28IMPLICATIONS FOR THE POULTRY INDUSTRY
  29. 29MARKET TRENDS AND REGIONAL ADOPTION PATTERNS
  30. 30SHORT-TERM APPLICABLE STRATEGIES FOR INDUSTRY IMPLEMENTATION
  31. 31ILLUSTRATIVE COMMERCIAL CASE EXAMPLES
  32. 32LONG-TERM RESEARCH AND DEVELOPMENT GOALS
  33. 33EMERGING ANALYTICAL APPROACHES
  34. 34FURTHER RESEARCH DIRECTIONS
  35. 35CONCLUSION
  36. 36GENERATIVE ARTIFICIAL INTELLIGENCE DECLARATION
  37. 37AUTHORS’ CONTRIBUTIONS
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Work overview

Section 27 of 37

CHALLENGES AND LIMITATIONS OF PROBIOTIC USE

Andreas Berny Yulianto, Aswin Rafif Khairullah, Widya Paramita Lokapirnasari, Mohammad Anam Al-Arif, Zulfi Nur Amrina Rosyada, Emy Koestanti Sabdoningrum, Bodhi Agustono, Mirni Lamid, Kartika Purnamasari, Bima Putra Pratama, Riza Zainuddin Ahmad, Wasito Wasito, Saifur Rehman, and Muhammad Aviv Firdaus · about 2 minutes

Probiotics can improve digestive health, modulate immunity, and enhance pathogen resistance in poultry, but their application faces multiple challenges [275]. Efficacy often varies depending on the strain, dosage, administration form, bird age, and breed, making standardized recommendations difficult [38]. Reproducibility across studies is limited by inconsistent experimental designs, endpoints, and reporting standards, highlighting the need for precision-based strategies tailored to flock genetics, baseline microbiota, and farm conditions [276].

Field applications introduce further variability. While controlled trials often show clear benefits, commercial farm outcomes are influenced by management practices, biosecurity, feed quality, environmental stress, and pathogen load [277]. This heterogeneity complicates generalization of results, emphasizing the importance of multi-site trials under standardized protocols [278].

Safety and regulatory considerations are critical. Certain probiotic strains may harbor transferable ARGs, requiring genomic screening to prevent potential horizontal gene transfer and AMR dissemination [279]. Strain authentication, virulence exclusion, and compliance with GRAS/QPS frameworks are necessary, while regulatory requirements vary across jurisdictions, affecting registration, labeling, and guidance for farmers [280]. Rare opportunistic infections have been reported in specific Enterococcus strains, underscoring the need for continuous post-market surveillance [281].

Stability and quality control are additional limitations. Non-spore-forming strains are sensitive to heat, oxygen, and acidic conditions, reducing viable cell counts and efficacy [282]. Batch-to-batch consistency, accurate CFU labeling, and shelf life management are essential, particularly under intensive production systems and variable storage conditions [283]. Delivery methods, including in-feed, in-water, and early-life _in _ovo administration, also face technical and operational challenges that require robust field validation [284].

Economic and practical constraints influence adoption. Cost-effectiveness depends on product price, inclusion rate, baseline farm performance, and disease pressure, while scalability, feed processing, and infrastructure limitations may hinder implementation. Farmer education and clear communication of scientific evidence are crucial for adoption and appropriate use [285].

Finally, future research should focus on standardized immune biomarkers, precision dosing, longitudinal ecological impacts on gut microbiota and AMR, and emerging delivery strategies. Integrating early-life interventions with microbiome-informed flock management may improve consistency and support the sustainable use of probiotics in post-AGP poultry production systems.